Basic Information | |
---|---|
Taxon OID | 3300027608 Open in IMG/M |
Scaffold ID | Ga0208974_1000901 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 11836 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (82.35%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F018535 | Metagenome / Metatranscriptome | 234 | Y |
F028501 | Metagenome / Metatranscriptome | 191 | Y |
F041172 | Metagenome | 160 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208974_100090110 | F018535 | GAGG | MKTQTNIAGPHWPQHLWPHTYTHGDTELLCFVDWEPGDRSVGYSGAAWLIHAFAGGVDVVDLLKDHIIRDIEGEAACSLSSD |
Ga0208974_100090112 | F041172 | AGGAGG | MAKLKTAILRAQETADIIGANESLLWRARDAISDAINNPEPDDGLASAERALALINTYLLENELCKQ |
Ga0208974_100090115 | F028501 | GGAG | MKTITAKYTGTCAATGARILAGDLIQWAKGRAVLLERRRTAVDTITLYGENGPQTYYQNARGRCIDAPCCGCCTL |
⦗Top⦘ |