NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000408

Scaffold Ga0208974_1000408


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000408 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18247
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (79.49%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002420Metagenome / Metatranscriptome560Y
F015970Metagenome / Metatranscriptome250Y
F030692Metagenome184N
F043818Metagenome / Metatranscriptome155Y
F052471Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100040811F030692GAGLQNIGDKPMSEVEDKKGIVIKFNPVEYEAIKAIGEGNASEGFRVCLRWAVHFHSIGLRSDDNLDYVGLCTVAD
Ga0208974_100040818F015970N/AMWEAYQELNDDDIMDAIQGSVAIPLAIKSGDWEYAQHFIKERIENKMQRRAEIALYSIIKTPSIDSDDELRMLRTLWLKNDYRGNKDET
Ga0208974_100040819F043818GGAMRLKHTIAAIIEENQDELFCPFCTKPKGDEIDCCDQSGNWFRLRYFDFDTQFSIAQTIFNLQKGVPDKKTS
Ga0208974_100040828F002420GAGGMTFRESTIKYVKDILRARTIHEVIAKELQEAHLRKLEAETAAEYAYAAIQYNEERISRLENRLSKHTKEGDYT
Ga0208974_100040830F052471AGGMIRKIRTFYGKRNGQRGNKVTTIDQGEAWLCEKCGEVIFFEHLIPKHFCKTEIKPVVHSDTESSLPP
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