NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000320

Scaffold Ga0208974_1000320


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000320 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21064
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (78.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F008296Metagenome335Y
F010232Metagenome / Metatranscriptome306Y
F015719Metagenome / Metatranscriptome252Y
F056346Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100032014F000368AGGAGMNEQFKQVVISWFRASAAAVVALYVTGITDPKQLGAAALAGLAGPVLKWLDPSATQFGRGSE
Ga0208974_100032018F008296AGGMTEAWVQEYDLLVSTLGMEYARKYSIIEPADIRQILWLWFVTHPNKYTEWSKLPPKDKEKLIAKSLRNAAITYCEKEKARKFGYDMVDLYYYDPSVIEAFLPSILADSYEIPSKIQDLNFQFGKSGEVTDGTNWLVLRSDIEKAFNQLPEAKQNILRLKFTIENCEWTELGKELNTSADGARMRVNRAINSLIRILGGWRSFNDTDNLVDKEQDEEEDDTRA
Ga0208974_100032024F056346AGGAGMSSTESPISINLKTAGGTQITLRADTADQFADMIAQGIHIITDAVTEVELAVKGTSANKPMSVSDIASSFNSNISSNESGGEQTVEDKWGNTWVYNKPGAPSCERGVMVLKYGKAQATGKPYKAFYDPAAAPNWTGPKIPAELRTKPIFA
Ga0208974_100032026F015719AGGAGMTMYYTEVDGTEPTVSTQVGGIKYTFTNESLTKLIEEKEQLKVELAQLERKFRSARFDVREFFQSRYETDSDEIVCEVDDVNNLLINLETEALTRSWSATVTITATVTGIEAPNAEAAQEILDDAFEVNLTVDGDVWVDDVSVESVHAES
Ga0208974_100032034F010232N/AMRTREELFKIKEAFAYAMLDLLDVYDELLATGRVYVDEPTVNDLAKNQEESNA
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