Scaffold Ga0208974

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1000313 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027608 Open in IMG/M

Scaffold ID

Ga0208974_1000313 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21310
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (44.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

21310

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (44.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004863	Metagenome	420	Y
F006099	Metagenome	381	Y
F021266	Metagenome	219	Y
F025670	Metagenome / Metatranscriptome	200	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100031310	F004863	AGGA	MVAGCSFSAVSQTHPGTAWSEVLAEKLGWRLTNLARQGCSNGGIRVQIDEIRRQRPDFAIVTPTFWDRMEIPADSVPYDWSQAPSSGTNPPLEQHLQNRKLGNGYHREDGIRNVNYGQEPSNMICETIFTLAENYEHPYRMGRITKQAQNGIRHWIDSIYDNAWKKQCDEWIMREGIIMMYLDGIKFIVCPNLLWPFDPDNQAQWRAAFPAVIPDHYINLDSAKSPQAICGNNPFTGEDPGYHSSAQGQKLIAEHFYDIWQNHFK
Ga0208974_100031313	F025670	N/A	MIPYGNKPQGSQYNLKESVAPGFQVYQARVKVKNELYANSMDVAIFAKNPSMARQLLIAQYGRDAVITNVVKIA
Ga0208974_100031323	F021266	N/A	MSKPVLVPRSSLYFHKWQYVILFILPEASFLRELKHERINQSIRYRNEWIARRGGARHITPEVEQTLHDACGYLLTRANPFKKVVCGNGLWLYTNNLEDFADIGTIPTGEILYINQAEVTLTANAVTLKNPRHAFRTYFKERWLSNNDLAILRRYFDTRRDIFRLGPGFANLVKGRRMWLMSNYFVDHDEPNADFLINMAVPGVVRKTLPIIARAK
Ga0208974_10003138	F006099	AGGA	MTSAKILYLARYRVPHAIMSLQPEFTRHLIGVDRTCIASPVPKDELWTVFEQYGVDTSNFDYAPDSEIYKRYPEVNNWVFDGDYRTYWLRQQAIKFAFLDMLDYDLMIMHDCDCLLIKDYEPFKDGRLNFMVLENERHSWGYYESIKNALGFERLTPHCFISEFVPVLKKDFNDLVKFLEDKHKKKWLDAMIDSCPPEPTVPPWGNGELIRWFSEYEFIGNWAMSRNDITMEFQRRYHYDSMEKIGDFDPTYHTAVCDAVPDLRFSLQYDWDKKVIPKFDYYMDKIRERIAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208974_1000313

Overview

Ecosystem & Geography

Associated Families

Sequences