Scaffold Ga0208974_1000282

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000282
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22185
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025976	Metagenome / Metatranscriptome	199	Y
F039598	Metagenome / Metatranscriptome	163	Y
F040488	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100028211	F040488	N/A	MEERGGCEMRFLVALSFLFLAACGNPLTRLVPKIEMPEPPKELMTPPKSLKTIIPPAAAPTTNVAPAGQ
Ga0208974_100028227	F025976	N/A	MKTYYEVYENAKVNHPITGARVNGNKLILKTKNITKALDLYAENEKTRWVEEITTDSDGCETTDIITGPYAA
Ga0208974_10002827	F039598	AGGAG	MSTLVVLVLVALAVWVGWKLWKKPDANNDGVVDHKDVVHAAKEVAAEAKTEAVEAAHKAVDKVKKARKKKAE