Scaffold Ga0208974_1000140

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000140
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31372
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (64.15%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F007911	Metagenome / Metatranscriptome	342	N
F014487	Metagenome / Metatranscriptome	262	Y
F015449	Metagenome / Metatranscriptome	254	Y
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y
F031026	Metagenome	183	N
F042872	Metagenome	157	Y
F072095	Metagenome	121	N
F093768	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100014011	F020510	AGGCGG	VSLQDILAMFSARVIGTYTPEQYAEQVIIARNNRMRWGMGQW
Ga0208974_100014013	F005502	AGG	MRTLLSILALLGFTTTKLSNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVIK
Ga0208974_100014014	F016963	GGAGG	VIEILPEQSTQEQLLNRVRSLARELAEAKAALAAAEGRENDLIDRIRAGL
Ga0208974_100014020	F072095	AGGAG	VSVRDLEQEGVLPISAAQSYGSAQLSQTTALIDLQTKHRDLRNRLDRIEEILECLLKKSGVQS
Ga0208974_100014022	F042872	N/A	MKLPIIINQIESGNCTVGSNPTPSDPYHYNDLCRNGNTAVITEPKKAHYQQLNLNSRGGYDLTPDAFVYHPNPAVCRMWHAQHEASK
Ga0208974_100014029	F031026	GAG	MRGGLNALLLVLSLALCSCATTSQTQDGPPPSPDSISYFIYEWDKAERTNKPCPQAYRDLFAKSLKALSDSLAETERERARQ
Ga0208974_100014031	F006891	AGGAG	MSTDQVAELSERLSLVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVVSTVWELIKRRFSL
Ga0208974_100014033	F014487	N/A	MPLLLLALFFCSCSPKKHTENNALPDYGEMGAATDAGQVK
Ga0208974_100014040	F093768	N/A	MAENPPNAVLSSRSQPLRVIRPTPDGVAITTDYLNTIINRIEDLVLIAKSQKPIPGNNVQINFTSQGAVINAVTQ
Ga0208974_100014045	F015449	N/A	MIDSFWGTTNIKVAAAASAFGAKLRQSDPVTCIVKEDGHRQFTFWFSVSGGEEAKAEMERTWADMKSDEESAIRYVRAALENRETLLGLMKRAEPIISIQRGGQTLLVSERASPELKRAILKKL
Ga0208974_100014047	F007911	AGGAG	MPAVTMLDRLIEAAFQELLSATVTGVTYHLSHDKTENMLPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTVDAHTQKCSKILQAFYDSSPLANRLNATTAIGSARCFNAKVESSEAEADDEERTMRRTYRLAVIAYPNSIAS
Ga0208974_10001408	F007747	AGGAG	MKDLGKITFGKARPAPKQVLVDVSYDAKTAKALHSFGLRQLKKDEEAVIQYVIVKALGAFAKK