NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000074

Scaffold Ga0208974_1000074


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000074 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43181
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (46.88%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001806Metagenome / Metatranscriptome631Y
F003889Metagenome463Y
F052555Metagenome142Y
F067679Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100007430F003889AGGALGPEYAAIVLTAVISAITGGSWVANKLLSRQTERIQQGVEHINTQRRRIDNLEDEVKRLPMDYVLKVDFLHEITEMHSNFRQINNKLDKLIEKLLAK
Ga0208974_100007441F067679N/AMAVPGRPEQAQTFLRRAADAYNSAMHSVGDLMPTKIKKGFQSGVELMAPESRREITDEQGNRILSSISNYSTLSPNFKKELKNVKGISFTETPQEFIGAYAARLLTDAGTDSTRHLYWRYNHPMAIADKLIEKAAGPAYKQFNPTQKGLVGLAISAPTVASLGHIDITNPLEQLRSKGFAQTYSEEGAEDRRETGQPGTEFLERFFLGRQGRPLKYETAKEDIPSLTPERYSNYMKNYYQDKGITGLGLIKGTMENLEGVPEARIVGFPIGLQAAGALAGGAMALRGALQTRPPVVTTKERRVISYPGGSSRVVEQDVNTRVPMATRKTASIALAGSLAGALVGNLTNQAIASLNNHPENLPSTNEYR
Ga0208974_100007446F001806N/AMGAIVKEQSICTRMDAKTRLQRVEALETIKNKALEKAERGEDSLEVRDFVTSAKKELAYELPDEDAFRKAMNATLAYKAKKG
Ga0208974_100007458F052555N/AMTTTTRRINEYTALAGIVKDLKAIVARESKRPQGCEDLTLSMLALLEEEIIPQLENEIEHDLDYDPTPQYLYDNTGGEPPVTMAKTHACAWQQHQEMHS
Ga0208974_100007461F001120AGGMTKRSLISFDRTIHGVNITEHGIKSFTKSIKLGPLQLTLNANPNGVKGSFSIPGTGLSIPNIKLM

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