Basic Information | |
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Taxon OID | 3300027608 Open in IMG/M |
Scaffold ID | Ga0208974_1000074 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 43181 |
Total Scaffold Genes | 64 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (46.88%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001120 | Metagenome / Metatranscriptome | 772 | Y |
F001806 | Metagenome / Metatranscriptome | 631 | Y |
F003889 | Metagenome | 463 | Y |
F052555 | Metagenome | 142 | Y |
F067679 | Metagenome / Metatranscriptome | 125 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208974_100007430 | F003889 | AGGA | LGPEYAAIVLTAVISAITGGSWVANKLLSRQTERIQQGVEHINTQRRRIDNLEDEVKRLPMDYVLKVDFLHEITEMHSNFRQINNKLDKLIEKLLAK |
Ga0208974_100007441 | F067679 | N/A | MAVPGRPEQAQTFLRRAADAYNSAMHSVGDLMPTKIKKGFQSGVELMAPESRREITDEQGNRILSSISNYSTLSPNFKKELKNVKGISFTETPQEFIGAYAARLLTDAGTDSTRHLYWRYNHPMAIADKLIEKAAGPAYKQFNPTQKGLVGLAISAPTVASLGHIDITNPLEQLRSKGFAQTYSEEGAEDRRETGQPGTEFLERFFLGRQGRPLKYETAKEDIPSLTPERYSNYMKNYYQDKGITGLGLIKGTMENLEGVPEARIVGFPIGLQAAGALAGGAMALRGALQTRPPVVTTKERRVISYPGGSSRVVEQDVNTRVPMATRKTASIALAGSLAGALVGNLTNQAIASLNNHPENLPSTNEYR |
Ga0208974_100007446 | F001806 | N/A | MGAIVKEQSICTRMDAKTRLQRVEALETIKNKALEKAERGEDSLEVRDFVTSAKKELAYELPDEDAFRKAMNATLAYKAKKG |
Ga0208974_100007458 | F052555 | N/A | MTTTTRRINEYTALAGIVKDLKAIVARESKRPQGCEDLTLSMLALLEEEIIPQLENEIEHDLDYDPTPQYLYDNTGGEPPVTMAKTHACAWQQHQEMHS |
Ga0208974_100007461 | F001120 | AGG | MTKRSLISFDRTIHGVNITEHGIKSFTKSIKLGPLQLTLNANPNGVKGSFSIPGTGLSIPNIKLM |
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