Scaffold Ga0208974

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1000041 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027608 Open in IMG/M

Scaffold ID

Ga0208974_1000041 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	56497
Total Scaffold Genes	85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (54.12%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

56497

Total Scaffold Genes

85 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (54.12%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001483	Metagenome / Metatranscriptome	686	Y
F002267	Metagenome / Metatranscriptome	576	Y
F021050	Metagenome	220	Y
F030372	Metagenome	185	Y
F050889	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100004112	F001483	AGGCGG	MDKLKDLLFGLLTYIGESPFRLFAVILLCVLGFGGWIVYSEKDNFMASYRAQQALPKMNGNYEQAVSFILKNTDAELVAVFEVNTLFNTRKLVYLTTRSSGLDRAYNGTNVGLLTKNHSNNQDVIALMSGQIPCSVYLTPQSYIGFIYKDAGVQYMCRISVPAEPGLFIGQISIGWKETPANVESAQTVLTVASSLLFDKK
Ga0208974_100004131	F021050	N/A	MIIDWNVNQVISDCQKMYRGANDNYETGYNNWPCKQDLYRVKFAVDEMLKNTSGFAGESEWLEQLEKEKVWKALKK
Ga0208974_100004148	F050889	N/A	MKDLYSTPEARLDTILGEVSFWAQMQRCRTSEEGKKHCTTGADTITWFRDTWGIRLLPSDDTIFGFLKRVDIVDEQKYMIFLLKWA
Ga0208974_10000415	F002267	AGGA	MAIVVGPGITLGPGVTLERGAVISATLVYDLDAANYSAVPVNGSTVAGTGAYTVSVANTTNRISWAADNGGVFRMTGASGTSADYIYGGPNWTTGQSYTVFMAYKRSVTSGGRLLNTQVEAQKDWLMGLYNGNPDAFFPNYAVNLPSSGADLVWHFGWATWNTSTSLGQLYTATSSQPTGTAYAVTNAGGGGFNNLRLFSRSSGSEAQTGDVGFVKVYNGVLTLSDVQSLYGTYKARFGY
Ga0208974_100004179	F030372	N/A	MDKKTKELAEQAGFVLDELPDTVLQPLETFAELLRGANTREVIALCANTINNNLNEQQQKVKNRWEIVELVVIVTAFIAWVTWWYTQSH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208974_1000041

Overview

Ecosystem & Geography

Associated Families

Sequences