Scaffold Ga0208974

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1000039 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027608 Open in IMG/M

Scaffold ID

Ga0208974_1000039 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	57851
Total Scaffold Genes	70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	64 (91.43%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

57851

Total Scaffold Genes

70 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

64 (91.43%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005117	Metagenome	411	Y
F007519	Metagenome / Metatranscriptome	349	Y
F034467	Metagenome	174	Y
F053072	Metagenome	141	Y
F054583	Metagenome	139	Y
F082158	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100003928	F082158	AGAAGG	MTTVTQVSTLSLEALRQGVADAVKRAYGAERDYAHKLCDVLPVEWYLVEHNDKGEDAKQVHAEKKALFKALNEAEHTNPSTVWARVRKYAQEHIEGTPEKTDGSTDASVGARQNRSLTLRLVEELTTLYKATKNADSLSDKERDCQTHIASALMAMGIDLATIQD
Ga0208974_100003937	F053072	AGGAGG	MRFLTMVERFTLWIKGGSMVIVDIGYKKYIMPKEKAMQLVEVLESAEIYEEKYWSEDKRKELGMTETYTYHVYPNEANFSMQIIGDSKYQMARLAGKPQEK
Ga0208974_100003940	F034467	AGGAG	MKDEMKYQSKVIPLRGYDHPKFKWINSSQTDVRRTWRKARLLIRLTNGAAYESRT
Ga0208974_100003942	F054583	GGAGG	MRGTGFGNVLAGNIAALKGQKRNEKRMSQKWKMCWKCQKDKSPNGGFLRITAGLHKFICKDCMDAKQKKLEDV
Ga0208974_100003946	F007519	AGGAGG	LTTGIEYLKVEKKRKGRGLGKKPALACTSLRLPKEVMDYFDTNHRMSKQAKMREVLTEYVNNQTGNKP
Ga0208974_100003968	F005117	GAG	MKVSYDKWYPVVQPTATTQTDVFAKRVERLDAERALNTQIAQQVKKFHQYEYEIYEYRMRQVTINIDINNLKREIDKLV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208974_1000039

Overview

Ecosystem & Geography

Associated Families

Sequences