Basic Information | |
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Taxon OID | 3300027608 Open in IMG/M |
Scaffold ID | Ga0208974_1000037 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 58338 |
Total Scaffold Genes | 56 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (64.29%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003268 | Metagenome / Metatranscriptome | 496 | Y |
F035640 | Metagenome | 171 | Y |
F060632 | Metagenome / Metatranscriptome | 132 | Y |
F063400 | Metagenome / Metatranscriptome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208974_10000371 | F063400 | N/A | LNRTQVEKLAKMADHFKEVEWFTLESNSSSGIGPMVSVKFNLFGDYDKDEDTTIDITDVSTW |
Ga0208974_100003716 | F060632 | AGG | MTRITVPWKNQSNTWWNETCANILEHFGLPGDRYVTEITADHMHFDFSNDKDALMCRIMISDKI |
Ga0208974_100003723 | F003268 | AGG | MSQSNIPSVLPTVERLLQRISVAEKSQQKEIRITIQEARDLTTELAIFSTKLGGTVQQIHAMLAQIKESSQNIDVKFDGGSF |
Ga0208974_100003747 | F035640 | GGAG | MHYICIENNTVVALLNYLPSVPSTVSVQEITDSQAEQLRAQTHNFDVASRTIIAVAANVATQKAQELANGQEREFLNSTDWKIMRHIRQKALNIATSLTNAEYLELEQQRQAAAARIV |
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