NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000030

Scaffold Ga0208974_1000030


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000030 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63044
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (69.57%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002097Metagenome593Y
F021045Metagenome / Metatranscriptome220Y
F029367Metagenome188N
F031035Metagenome183Y
F095158Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100003015F002097N/AMFTIWVANVATARLIGWILTAVALCVIVGVTSIAYIETLYMKAQLKREIKELRKLKQELKENK
Ga0208974_100003030F021045N/AMAGSSVLRTAGQTVALSVTSTAHAAVLINDSTNDQVNYSAFLNTGASPIAVRWGPTDPGAPVFPVDGTNGDFVLPAGMIQPLIVATSVVPYYITAKSNSGTAGILYVTPSVYQS
Ga0208974_100003040F031035GGAMNKELINLRIQDLISKGKELENQLQQINGALQQCQWTLAELDKPEDKPEE
Ga0208974_10000305F095158GAGGMKNFYVVEINITNTQDGWSRMEFTSITKALSFISLMVKRGHHCQIFQGVTA
Ga0208974_10000306F029367AGGAGMKPEHSEFDCMVCSHSDAPDVDLECYFDAQSTNLWFVYIGNALITDLLRDTVIQSLERGYVKACKEEADNNALDFALARYESKNYET
Ga0208974_100003091F031035GGAMTKELINLRIQDLIAKGKQLEQELQQINGALQQCQWTLAELDKTEDKPEE

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