Scaffold Ga0208974_1000025

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000025
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70305
• Total Scaffold Genes: 131
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (65.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002268	Metagenome / Metatranscriptome	576	Y
F003826	Metagenome / Metatranscriptome	466	Y
F008243	Metagenome / Metatranscriptome	336	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100002523	F008243	AGGA	MHPLEHEIQEITEQCQLGNLTEDERNYLLTEIRDIRAAQQCADNEITFRYIVQACNVAMCLV
Ga0208974_100002542	F002268	GGAG	MNGTPTSSGTGITGFIEIFEGRLNKMKLHLKEELSKAKGERDRKAIRRITADAKKLNKTLKEMRNANIKLCPHCGEKL
Ga0208974_100002589	F003826	AGGAG	MDPITIGLAFAAAQSAVGHIKQAIALGKDINSLAGQFSKFFESSDAIHREKTKVKAKGMRLGKTDAELGHEALQIAMHSDALRQAERELKDMILWTLNKPEMWEHMIKERTRLFKERAEAELEEDKRQLAHKKKMADQFIFAMYFIAFSAFLFCFVMAGVGIYGAMEEKRIYEEKVAKRNLIIRQQQKERDIKERAERDKAIGG