NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000025

Scaffold Ga0208974_1000025


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000025 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70305
Total Scaffold Genes131 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (65.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002268Metagenome / Metatranscriptome576Y
F003826Metagenome / Metatranscriptome466Y
F008243Metagenome / Metatranscriptome336Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100002523F008243AGGAMHPLEHEIQEITEQCQLGNLTEDERNYLLTEIRDIRAAQQCADNEITFRYIVQACNVAMCLV
Ga0208974_100002542F002268GGAGMNGTPTSSGTGITGFIEIFEGRLNKMKLHLKEELSKAKGERDRKAIRRITADAKKLNKTLKEMRNANIKLCPHCGEKL
Ga0208974_100002589F003826AGGAGMDPITIGLAFAAAQSAVGHIKQAIALGKDINSLAGQFSKFFESSDAIHREKTKVKAKGMRLGKTDAELGHEALQIAMHSDALRQAERELKDMILWTLNKPEMWEHMIKERTRLFKERAEAELEEDKRQLAHKKKMADQFIFAMYFIAFSAFLFCFVMAGVGIYGAMEEKRIYEEKVAKRNLIIRQQQKERDIKERAERDKAIGG

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