Scaffold Ga0255079_1012906

Overview

Basic Information

• Taxon OID: 3300027601
• Scaffold ID: Ga0255079_1012906
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepB_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2007
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000980	Metagenome / Metatranscriptome	814	Y
F001043	Metagenome / Metatranscriptome	794	Y
F034472	Metagenome / Metatranscriptome	174	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255079_10129061	F000980	N/A	VCTSDCDALIEYTFKDGYGWPNGVTDLTCRCGTSCTLLSVEDATIPYTDSPLPTEEEKMETTETSAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVSSIEWDLHNSRTNSKTIHVLNSKIDTVKDIITEAYADSDDQDTLRAIAEALGIELVREVLFTATLEVSGTYTYNVLDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA
Ga0255079_10129063	F001043	AGG	MSDYKDGFQDGYKFAREEMMEKLAEIDIADIDSWILDRLSEMIEGGTL
Ga0255079_10129066	F034472	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQET