Scaffold Ga0255117_1003965

Overview

Basic Information

• Taxon OID: 3300027600
• Scaffold ID: Ga0255117_1003965
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4016
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023295	Metagenome / Metatranscriptome	210	Y
F048257	Metagenome	148	N
F063343	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255117_10039652	F048257	N/A	MTAFPSSVAARKLIKGENYTDSAYWVLRRTLLIRSGLSLAGEKKNIWKKALYGSLAVQAFVTAWTATHMDEPVASLPSGEVAIQKDVVGILGTYLLRSAIVGTGLWLSGERKNLTRNTLISTALIQASVLLWAKDQEV
Ga0255117_10039653	F063343	N/A	MNYLILLGILGLFIFGNKVRTNWVSGIKSTLIKLMVPGADRRLFSGFTASPLSFIRNAASWVRVFNWTGVAAGINGLGGVGGGTLISRRHVLFANHVPYPDRPFDIFFANKDSRTFTYKVTNIQQVGSTDIAIGTLDKDADASLNVYKVLPDNWLQYIAKKTENFNSLGVIDIRYAFVLPVLYSGQDKKVSTGDVVSISMGIAAVNIPAFETARAFGDGVRGGDSGNPIFAMLGDELVLLGAWYRGSTAAGEVGGFPWLISQKSAIEKIIGQKLQVASMSGLDRIA
Ga0255117_10039654	F023295	N/A	MLHGIGCQTKVILVPDGQPVMLAESVKAKVYAFDASGKLVPSSNRVVLPAGWYVLPRK