NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255122_1082623

Scaffold Ga0255122_1082623


Overview

Basic Information
Taxon OID3300027595 Open in IMG/M
Scaffold IDGa0255122_1082623 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)530
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002977Metagenome / Metatranscriptome516Y
F077285Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0255122_10826231F002977AGGMKTQIPAEGIMKTNDWGNSKVYRIACNCHDENHNHNMWVEADDHDIVVTIYTTGKTNWWSKTRWYHIWTLLTKGYIDTESSVHLSKQQALNYAETLKSAIDDVKE
Ga0255122_10826232F077285N/ANDDKLQRLYDNFLEFADHMCAENSPMEVAAIMMTQSLTIYKSAMSEDDYNRMVDNISASRNQVKTFERPTFQ

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