Scaffold Ga0209733_1070074

Overview

Basic Information

• Taxon OID: 3300027591
• Scaffold ID: Ga0209733_1070074
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 910
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002731	Metagenome / Metatranscriptome	534	Y
F012331	Metagenome / Metatranscriptome	281	Y
F077641	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209733_10700741	F077641	N/A	RLRRAPAGVSVITRVEDDRLILDLRTVFPEQEPLLIKTLAGALH
Ga0209733_10700742	F002731	AGGAG	MATALIHMDPIQKQRLARRAKLRGKSFSQEVRDAVDLYLDLPVENEAELRGLAKAANHAADRMIKNLDETVAYVDRVLKHRRNGV
Ga0209733_10700743	F012331	AGGA	VSWARDAVAAIRKIVLIEDRMEALTAQVKHLADGYTDLDRRLVRLEAKFDLIEKMAAGGRRALPAKSQSHKDKKKTS