NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1018698

Scaffold Ga0208966_1018698


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1018698 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2038
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031866Metagenome181Y
F048309Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0208966_10186982F048309AGGMTCYGRDIYHVTTHTNKVGQESYVFEFDLIDSGDGGWNKPQDVHLVRNEYNGTYGLFTMGLQLATERRLILAEIQHFTSLLVEISEVLRKTKTWWSANNK
Ga0208966_10186983F031866N/AMRKITNKSPNRLIDMEFNIPIFNADTQMYVCTDVSEIASSPGGKDYTISFSEIKQKYAVPERINIDMFIPTTDANGEPAHVTMHEVHPKRGDTLLTKVMVTKSKLSSLVGLKEVFYNMAKSL

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