Scaffold Ga0208966_1011902

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1011902
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2587
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006885	Metagenome / Metatranscriptome	362	Y
F018928	Metagenome / Metatranscriptome	232	Y
F045545	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_10119021	F045545	GAGG	MIKQIGLFFICKIKSHNLVDAGSCPFTGKNYAACLRCGETITK
Ga0208966_10119026	F018928	AGGAG	MIIRSLNTMEKIVSKNKNLIWHAWDVIDLKESDTAKTSPVGIRVKNKWYLHRVYKPGRNGWDIPNKYKD
Ga0208966_10119028	F006885	N/A	LAYWSIIKISNKKRISFLKKIKYRQSDIYEIIKDFIPKQRFDKPKFITQSKKHVQKNMLKVVIEKDKAYWILDNVFYTANAINGRIDEDTAKPLDIENMSTKELDNMLSILDDLKQGVGPDDSGSAGNKRV