Scaffold Ga0208966_1008665

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1008665
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3040
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F071169	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_10086654	F007310	N/A	MRTVSWNNTECWNNHHHYELLIKDITGFDLTQNLCSESVKYMAKRLSETKYQRRFKTLYTIYENEYNVLVEKFNNQAYNNGKIEVSYEKEKVCGRA
Ga0208966_10086655	F006220	GAGG	MKKRKYVEELNLVSGTEMMRASQMRPASFKDKSKYTRKTKHKKGSENE
Ga0208966_10086656	F071169	AGG	MSNIEVQVNLDELDVVRRKLSFQCNKDFTAEETIQFLIEREYNTVKKPRHTAQKSDIKEAIYNGYTSTEAMKKLNVSRSTFFRHKAKERKLLEESE
Ga0208966_10086658	F004583	AGGAG	MRTTRNSDRLREILFSTRNQIVSLKDIQMDMLRIDSKVANQIATQISALEEVYKHQMSLVCQTESVEPKRNGWFSGHVKTKEDRLANIMD