Scaffold Ga0208966_1003956

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1003956
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4512
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018927	Metagenome	232	Y
F043399	Metagenome	156	N
F048994	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_100395612	F018927	AGG	MNKHIEITRHLTVDGTSTYYVVEKTKNSSSIIWNGTCKQAAYQVAYRNARKGNTPLYDTLYKAELDRNGVKHIIPIGNELLEVNN
Ga0208966_100395613	F043399	N/A	MFINDYPIVIWTIVKKNNNYILLDSCGIEVFRRKEDRKKEIYQYCEDNGIDIQEEF
Ga0208966_10039568	F048994	N/A	MIGKVKIESGFINLYVNGVCVVSTSTMAEIRDALKRYNLQGYIMGTE