Scaffold Ga0208966_1000382

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1000382
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14324
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (69.23%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020540	Metagenome / Metatranscriptome	223	Y
F021534	Metagenome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_10003824	F020540	N/A	MSKIQQFGRPYETFDPSNKKHRKIFHDVMRYRTWGRSEICFWAEDDSSGSNSLMDQCIKAMGRYYIEKEFGELVDDDPFNSGKETRNRPNPHPYIYTRKSTIT
Ga0208966_10003825	F021534	GAGG	MKTKTENEVVHFLKELLHPEGFGWAVTDEVRKVSKRLLIMIESESINEQDSTIRQTVRNV