Scaffold Ga0208966_1000003

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1000003
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113953
• Total Scaffold Genes: 190
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 140 (73.68%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F002071	Metagenome / Metatranscriptome	596	Y
F002501	Metagenome / Metatranscriptome	553	Y
F008814	Metagenome / Metatranscriptome	327	Y
F011394	Metagenome / Metatranscriptome	291	Y
F040629	Metagenome / Metatranscriptome	161	Y
F049621	Metagenome / Metatranscriptome	146	Y
F103268	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_1000003106	F002501	N/A	MWCQKCKGRVFVDRVFSQKLHVELFCMQCGKRWMINKESSAFGKWLEKTDRQHSKNYSIS
Ga0208966_1000003120	F103268	GGAGG	MVDYGIDAIYEIRKHLWQEIQDNNILDANSYYSDNLGEAIVPIIPVQQSPELNQFLNGKTHIVYDKMGSTYEENWMVCCEKISFTIYSVDYSEINEIRNLMIDVFRRMDDSAKDLNRSKTTNKIIFFNTLILEMSPTEPSEELAGFLSADVILEVKYARDVSPRGRFY
Ga0208966_1000003165	F001562	N/A	MKSQFEKDLDIKDSFIEMLDELYPKYKIGNSTFTASEILECCDPVAFAIGLLEHEDYLKEMEN
Ga0208966_1000003179	F049621	GAG	MAELKYFNALINSVIGDHDQKKAAKEYLAEVDPDIWGQEE
Ga0208966_1000003183	F002071	AGGA	MTNSTLEVGATYTTTQSGITGIIKSVDTLPNGTSRILLDVEGKDRWTSTTK
Ga0208966_100000356	F008814	N/A	MDNKLTVLEEIIKEISEELYQKWYNAPTDVEKTKEWSEIMAKNAGETTFFIIQSFMNKFNAAAEELKDK
Ga0208966_100000364	F011394	N/A	MSNFIDKNKNHFKHGINQWTGEPNKPVFYTAEMSKKVRQLKSPASNLQMDIIKYPDFLAIRLYEDNFSQYDGGLKLRVIDYIEMVKNIIESYGVRVELEGKPGGRQQ
Ga0208966_100000367	F040629	N/A	MEIKAEVEAFNEEDAREYISDIFGIDEEIKSIKVISIQKKS