Scaffold Ga0208971_1000688

Overview

Basic Information

• Taxon OID: 3300027582
• Scaffold ID: Ga0208971_1000688
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_18_M0_10 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22806
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (92.31%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015934	Metagenome / Metatranscriptome	251	N
F073753	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208971_100068821	F073753	AGG	MTDKFMAQLLDQLINKLSKVDQRNIKIAIMHADHGNYHTIDSMIRAANSRSESTLKAIRAAL
Ga0208971_100068827	F015934	GGAG	MRQTKELLFSGEHPRLITGATYSVYALALITGISSATLYRRLQSRDEVTDWDITPASERNPERYGNKGRDSVGYSRLETATERLSAKWLRLAI