Scaffold Ga0255075_1015010

Overview

Basic Information

• Taxon OID: 3300027578
• Scaffold ID: Ga0255075_1015010
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1539
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020497	Metagenome	223	Y
F076888	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255075_10150101	F076888	N/A	MLIGKNCRKRASIKPPFKGCVVVQGQTYSMYVDLVRESWEGYQIIFSTWDNTDKSIYREDDIVIYNPIPDNAGTKNLNLQKISTINGFLKARELGWDRALKSRSDFVTTTADGLFGLFEKLNLHAYWDGYINDFYMEGEIDDILTLFDVDVNGNFPEWKLTKQLYDSGLNKKVHCIVDTLEYNAADIRWERMGYWFSAHTGNGICTSVLPEKWG
Ga0255075_10150104	F020497	N/A	INVWAGSLGVMACDDQGLPIMEESRSWASLENEWFQNLSTEDKELVNQIINKNK