Scaffold Ga0209525_1001338

Overview

Basic Information

• Taxon OID: 3300027575
• Scaffold ID: Ga0209525_1001338
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5401
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002112	Metagenome / Metatranscriptome	592	Y
F011442	Metagenome / Metatranscriptome	291	Y
F064931	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209525_10013383	F064931	AGGAG	MEGELFYKTAFCSKYERLLCVCVQSLDAWRNLHEEIANSGLRSKEAGDELMRLQADYAKAYSRLEKHKDNCELCHFVSKISARNEASLSVAVMDKKHSA
Ga0209525_10013388	F002112	GAG	LPGPGNQIHDLNPSTFPPVGLFWTTEIPVAGVDVQLGKGSASLQASDVAILDYGSIQNALFGGGPPPTPGTVSFKVVWSGVDQRLNITNTDPVYGGFAGEFVRNTAQMEWNAAVGDYTFVSDPIATSSSSFAEIGHERNGSFFP
Ga0209525_10013389	F011442	N/A	TKLDMPWAKQDVTLYYGEVPMGESVELLVVREGLARELLPDGKIGKTSDHPYYEVCTSPVIYDLAAALKRTQGLGLETARA