Basic Information | |
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Taxon OID | 3300027570 Open in IMG/M |
Scaffold ID | Ga0208043_1000287 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 24493 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (86.96%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.1318 | Long. (o) | 11.881 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007331 | Metagenome / Metatranscriptome | 353 | Y |
F007434 | Metagenome / Metatranscriptome | 351 | Y |
F013561 | Metagenome / Metatranscriptome | 270 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208043_10002872 | F007331 | GAG | MSTIEEVRAAEKRVQEVLEALKKVGAQDPSHLTTELKKATDDYARAVRELNSTWPTIFVGREP |
Ga0208043_10002873 | F013561 | GGAGG | MAKSDSQNPHPEDLLEAFRVLIKAAEEGAAIPPVAERDLRSLHQLCVERAKRYCGKDGVVSVDSMARACSPDANLPAVWLRHTELRSLYRQGLLAEWQLGTLLDDAVFRLAATIPMSGIHLDQQAFIRQLRGRTASVNSFTVHAPQR |
Ga0208043_10002874 | F007434 | GGA | LEQPVRQYSELLNKVLDRDLRFDSGELEQTADILAGKKRSLKDEIARQPNAALKTALQGQLALLERVLERVNEACVMF |
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