Scaffold Ga0207981_1002503

Overview

Basic Information

• Taxon OID: 3300027560
• Scaffold ID: Ga0207981_1002503
• Source Dataset Name: Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3288
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009342	Metagenome / Metatranscriptome	319	Y
F053116	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207981_10025032	F009342	AGG	MIEFRPSTINLSVYILLSVGSICSIWVSYPVAYGVDFYSKDESPFGISQGNWVAKYWNWSLSLPLDPQTGRVAGLHDNGCLVEKVNSTIMLVDAGAGGIWNQKCTISRNDGILIPIWTGECDQGYKGFENASEKQLSDCARGFDLGKIKGQVKVDGIPVATLDALDYKTNVMNNVIEVYTKQFNATNPINTHFIVERYGTFPGAAHGWFVFLKPLQPGNHTVYYQNSVEPTTLSGAGNVNSAQFTYHFKVE
Ga0207981_10025038	F053116	GGAG	MNILKRNRFDRRSDSTLIVLIAISLLYIMVTITALYPFDRLQIVAAATLQENNNNTKPVFLSTISTTIATGVGATGAILTVPGYLRARKQPKFLAAYLLKIHNKHDELCRYPKLSDKSKNEYRNFLDSLRCDIIYSLKNGDINENQYTLIEDRIAEYLNRLNYPK