Scaffold Ga0209831_1015181

Overview

Basic Information

• Taxon OID: 3300027554
• Scaffold ID: Ga0209831_1015181
• Source Dataset Name: Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4512
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Bivalvia → Autobranchia → Heteroconchia → Euheterodonta → Imparidentia → Neoheterodontei → Venerida → Veneroidea → Veneridae → Mercenaria → Mercenaria mercenaria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: Maine, USA
• Coordinates
  • Lat. (^o): 44.342
  • Long. (^o): -68.065
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013163	Metagenome	273	Y
F038959	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209831_10151811	F013163	N/A	GSSRKGQTSTGPRGLSVNQLHSSWEEDDTETYDTVAVLPSGTPGFRTVGASPHPRREAPTGPPLCYMCWTRGHRVPDCKILTDKQRDLVRAARNNLLRQRNRGADPAQDRTSVVALLWDDLLGGAEPTKMDGGDVPPVATPAKGRRAAGKA
Ga0209831_10151813	F038959	GAG	VAPLEFVTPERVRSLSVERMVGSPAPEEKDGSPRGVREATRARLRNLIYKVRSSLSLAQRRYKRNYDARVRPVNKDIREGDWVFVDGHARTKHKLGTRAAGPHKVLSRGEGTFSLDIGGYPETVSSDHVTAAPDPVGDPQKLIQSLGVPQDVVVPEGHQHTGKEFVWEAFVGHEVPDDGMLRLWTRWWGYHPDEDTLELASRFDLRKVHQYMRRVGLRVEEEV