Scaffold Ga0208947_1017829

Overview

Basic Information

• Taxon OID: 3300027553
• Scaffold ID: Ga0208947_1017829
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_04_M0_20 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2002
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043442	Metagenome	156	Y
F099986	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208947_10178291	F043442	AGCAGG	MKIYFNGNNKAHMEALQECKVKNVVLSFKYSYANITKFRDRFDKLFVVAGTKTEPERYYELLKKHRGVYDYAIQYDVMYNMNETLKHYRKEREMGIDWTIPVLQENYLNHLSQLRLEPDTYVCLGEVHGRDETEDQIRKLPPNLKYHGLAKGRYTTKTKLFESLDTSGWISAAMSKKCEVWNNNSTNFMFFGDKGKSMIPMLNHACEVHKEYLELINLNKQDLIDGDYKALLKAPFALLYLPMCKQLNILDENFNL
Ga0208947_10178293	F099986	N/A	FILRSNIMPLAHELLHAVYQDGIGTHHITRKYDAPEGRAGTRGAAATVIVHDNWYGSKKTIKFWIRYRFIWLPITIPYIPIKQAKKDYSV