Scaffold Ga0208984_1017297

Overview

Basic Information

• Taxon OID: 3300027546
• Scaffold ID: Ga0208984_1017297
• Source Dataset Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1435
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009847	Metagenome / Metatranscriptome	312	Y
F070504	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208984_10172973	F070504	AGGAG	MEQERASISTHAIMDKVRELDLYPTVVSESRFTASMRLARAMEIAYKALSSPEKSA
Ga0208984_10172974	F009847	N/A	MTEPERQVAVESGQVKTPERAPGRRELKPPEWFEERLSTWVQRMGLGAWTIRTSFKPKLRGAEGYAEVSPTFLEAELQFRQDVLVERGDVVIVHELTHILTDEWARAVEQVVHDMVPRRLQREARTYLRQHEESVVEAIAHALVRTAEQQESGRSAKAGSQPSRSSG