Scaffold Ga0209008_1000537

Overview

Basic Information

• Taxon OID: 3300027545
• Scaffold ID: Ga0209008_1000537
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11669
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052072	Metagenome / Metatranscriptome	143	Y
F062016	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209008_10005376	F062016	GGAG	MKTFYNVATLILMVTVLAVSAFAQEPGPETALVNLTEGQGAIASTGAQAWDGLSEFVLIPGASLMGASSTTTALYLGFTGGSEADIGNMVLYSTPRNGSTVVKVTKVLLGGSSSPSINLTSTSVCPIQPISATNPCFVRLDTVKAALSPLDDYYFTVYFTLDTNNEKISGVGQSIAPGALSGWMLYGDQTRIGVKGALPTNENSDQPPYFLAYITNQ
Ga0209008_10005377	F052072	GGAG	MKTIFKIATLTLMIFAVSGYGFSAAKAENLERGIIGPVGSNVSWSGYSVIAQVPGAGLIPVTSTTTVFYLGFTAGAQADVSNMVLYTTARGSSTITAVTPITLGNISNPMIDLASATVCPVVEISTFNPCIVRLDPTKITLSALSDYYLVVYFTASDSNNNAIGLTAPQFQQSSLRGSYESGDETRLSVGGSIPSSLSFSNQPYCLMYVMTD