NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209791_1179452

Scaffold Ga0209791_1179452


Overview

Basic Information
Taxon OID3300027540 Open in IMG/M
Scaffold IDGa0209791_1179452 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)894
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023239Metagenome211Y
F047351Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0209791_11794521F023239N/AMWVVWANSQFATVFFSFLFFGFFDKATGRTVRPIWTNEGSKRVVPLKEVPFGGLNDVSLNFWGKIPQKLKFWGREWDF
Ga0209791_11794522F047351N/AMALMRLPMIFGADIFIQSGVIDIFSKIKDGGCRHLGFVWVSHRTTHEASFVVRTSREEFVMIG

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