NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255125_1026742

Scaffold Ga0255125_1026742


Overview

Basic Information
Taxon OID3300027534 Open in IMG/M
Scaffold IDGa0255125_1026742 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1289
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009599Metagenome / Metatranscriptome315Y
F011368Metagenome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0255125_10267421F011368N/AMNHTLTHRDIAGSHLSPGDHCLVTEHNRIILARVIQVYESSNQLQLQPLSSDAGGRRSKPSLKKIRRECYNVYRIADTEITMSILRGAI
Ga0255125_10267422F009599N/AQICNLLWNCDSIEAVDAMVNAMPPAYKQRAEVMRELMTAAQLDQVEDIHEDITSYLQRIARL

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