Scaffold Ga0209968_1010963

Overview

Basic Information

• Taxon OID: 3300027526
• Scaffold ID: Ga0209968_1010963
• Source Dataset Name: Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1398
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location

• Location Name: Joint Genome Institute, California, USA
• Coordinates
  • Lat. (^o): 37.931388
  • Long. (^o): -122.021761

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000261	Metagenome / Metatranscriptome	1428	Y
F078917	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209968_10109631	F000261	GAG	MPTVRLRDASEYPEPARRLFELSKAWFDYDFKEPPAMSRVMAWDPHCGGPHGRAMKRAMAAGEFTRAEKEMVAAVVSGVNACSY
Ga0209968_10109633	F078917	GGAG	VGRDPGAREELMEIGLTSLPVILIGEHKLAGFNPKKIDEALAEGADHG