Scaffold Ga0208890_1000104

Overview

Basic Information

• Taxon OID: 3300027523
• Scaffold ID: Ga0208890_1000104
• Source Dataset Name: Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7445
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location

• Location Name: Laval, Canada
• Coordinates
  • Lat. (^o): 45.54
  • Long. (^o): -73.72

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015112	Metagenome / Metatranscriptome	257	Y
F058980	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208890_10001044	F015112	N/A	MDFEETLATLGFHPAAGRTPRGVQVLVAEPNAFLTYTVQAFDDGTALFSWEFAVGEYLRTKGIQFGSDETLNQFMFPREDTRGPQDGGWLADAIQQAQTQLASLRFDRP
Ga0208890_10001045	F058980	AGGAGG	MSARVESPPIGGGTLGGSFVIAVVVALSIGAFVGSLVTYAIDSDGGTSPTFVARGTPALTAVDVGYGSKAIEGPMLAERFSGLGSAVVWDAGKLEAMEGRQLAEQFRSEAGSAVVWDAGKLEAMEGRQLAGEPRQRPHGGPLG