Scaffold Ga0209384_1010860

Overview

Basic Information

• Taxon OID: 3300027522
• Scaffold ID: Ga0209384_1010860
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3237
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F001802	Metagenome / Metatranscriptome	632	Y
F007611	Metagenome / Metatranscriptome	348	Y
F038864	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209384_101086010	F000126	N/A	MRDFKITKKEGEWYNTIVTDSYGKKYQNWYETASEASDWVMYIWEKEDWFNSVNSEELLYKAIQECKAIDKEKGIGSIL
Ga0209384_10108604	F001802	GGA	MKTIKQLKNNYLQLGNAIYRPYTVCELPANFGCIEFNEKEGVSEWFNYKGFTYLYEAMAK
Ga0209384_10108605	F007611	N/A	MSRIKWITVLDYSSGRVFQYRVSINKHAEEYIIFKKHRLKDVEWMEHSDSRLITN
Ga0209384_10108607	F038864	N/A	MDKKIIVSALEIYKAFLVKRDISEHDQTLEILIKVNEQIKLIKEWKK