NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209384_1010860

Scaffold Ga0209384_1010860


Overview

Basic Information
Taxon OID3300027522 Open in IMG/M
Scaffold IDGa0209384_1010860 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3237
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000126Metagenome / Metatranscriptome2021Y
F001802Metagenome / Metatranscriptome632Y
F007611Metagenome / Metatranscriptome348Y
F038864Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0209384_101086010F000126N/AMRDFKITKKEGEWYNTIVTDSYGKKYQNWYETASEASDWVMYIWEKEDWFNSVNSEELLYKAIQECKAIDKEKGIGSIL
Ga0209384_10108604F001802GGAMKTIKQLKNNYLQLGNAIYRPYTVCELPANFGCIEFNEKEGVSEWFNYKGFTYLYEAMAK
Ga0209384_10108605F007611N/AMSRIKWITVLDYSSGRVFQYRVSINKHAEEYIIFKKHRLKDVEWMEHSDSRLITN
Ga0209384_10108607F038864N/AMDKKIIVSALEIYKAFLVKRDISEHDQTLEILIKVNEQIKLIKEWKK

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