Basic Information | |
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Taxon OID | 3300027522 Open in IMG/M |
Scaffold ID | Ga0209384_1006087 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4761 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (27.78%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: West Antarctic Peninsula | |||||||
Coordinates | Lat. (o) | -64.8156 | Long. (o) | -64.0406 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001802 | Metagenome / Metatranscriptome | 632 | Y |
F007611 | Metagenome / Metatranscriptome | 348 | Y |
F007827 | Metagenome | 344 | Y |
F038864 | Metagenome | 165 | Y |
F076516 | Metagenome | 118 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209384_100608711 | F038864 | N/A | MKIDKKLIVSVLELYKAGIMEKVDVSKHDEILETIIKVNLQIKLIKEWKK |
Ga0209384_100608712 | F007827 | N/A | MAQCSAKKLTNKQKRSVKRQVDLDLGAKVPITRVFVSKKLYTRKKKHKK |
Ga0209384_10060874 | F076516 | N/A | MKTKQELEQSIVMLEDALQSGKTHVATYQEDLATAKKQLADVSKPVLTGLQLDEIQKAIESAVGNFDFSDLDNYDKDFELDYDGRVQLSNFDFTNAQDLIEMIVEKVHTLFVEAEEPKL |
Ga0209384_10060878 | F001802 | GGA | MNTIKQLKNNYLQLGNAIYRPYTVCELPANFGCINFNEKEGVSEWFNYKGFTYLYETMAK |
Ga0209384_10060879 | F007611 | N/A | MKKKWITVLDYETSRVYQYQVSINKHAEEFIIFKKHKLKDVEWMEHSDSRLITN |
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