NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209384_1006087

Scaffold Ga0209384_1006087


Overview

Basic Information
Taxon OID3300027522 Open in IMG/M
Scaffold IDGa0209384_1006087 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4761
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001802Metagenome / Metatranscriptome632Y
F007611Metagenome / Metatranscriptome348Y
F007827Metagenome344Y
F038864Metagenome165Y
F076516Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0209384_100608711F038864N/AMKIDKKLIVSVLELYKAGIMEKVDVSKHDEILETIIKVNLQIKLIKEWKK
Ga0209384_100608712F007827N/AMAQCSAKKLTNKQKRSVKRQVDLDLGAKVPITRVFVSKKLYTRKKKHKK
Ga0209384_10060874F076516N/AMKTKQELEQSIVMLEDALQSGKTHVATYQEDLATAKKQLADVSKPVLTGLQLDEIQKAIESAVGNFDFSDLDNYDKDFELDYDGRVQLSNFDFTNAQDLIEMIVEKVHTLFVEAEEPKL
Ga0209384_10060878F001802GGAMNTIKQLKNNYLQLGNAIYRPYTVCELPANFGCINFNEKEGVSEWFNYKGFTYLYETMAK
Ga0209384_10060879F007611N/AMKKKWITVLDYETSRVYQYQVSINKHAEEFIIFKKHKLKDVEWMEHSDSRLITN

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