Scaffold Ga0209524_1012344

Overview

Basic Information

• Taxon OID: 3300027521
• Scaffold ID: Ga0209524_1012344
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1719
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F007596	Metagenome	348	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209524_10123442	F007596	GAGG	MSLRIRFRFDGKCSLHPRYDPARNGRPQHSNCEGCESLYVIHLYTKIAKRRAENENGILLRTSSGREEQHAIEEPGQLSNPENK
Ga0209524_10123443	F000208	GAGG	MRIRVTTRADLYEKLKQEHIERGYRIEDERPIPVNGFCSFIAMREMPVSDTVDELVAQAINGGRGSHRDW
Ga0209524_10123444	F002560	AGGAGG	MVEHNPPPHADRVPLIPLPIALYISDGLVFELYDGGQPHRRFSIRWERLVPTKESEPEAASESPRTVSGIHKE