Scaffold Ga0208685_1003112

Overview

Basic Information

• Taxon OID: 3300027513
• Scaffold ID: Ga0208685_1003112
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4969
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.9517
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002914	Metagenome / Metatranscriptome	521	Y
F046585	Metagenome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208685_10031123	F046585	GAG	MQLLPLEVDELYMLLGCQLLVSEKPTRVAGIAGYLSAARKAKKAKNLYAMLPSKPNASDWEEGLEFICNDLIRDGVRFLDQVKEELRKGVCNEDIINLADEINESSMQILVMIVGAVLKMPLQFEAISATLAALLCKSGLRDFCK
Ga0208685_10031124	F002914	GAG	MDHVCQHCGELIVGNTYRVTSEEEGIILLDMIVCSLCFMEAKRLRLHTEEINVRGKQASSRNRGSNRSRIGI