NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208685_1000592

Scaffold Ga0208685_1000592


Overview

Basic Information
Taxon OID3300027513 Open in IMG/M
Scaffold IDGa0208685_1000592 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12486
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9223Long. (o)-106.9517Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044666Metagenome / Metatranscriptome154N
F083021Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0208685_100059212F044666GGAVNRPREHAQLLRAIGQALEVLNFGTFEMEVAGGGFVVRGTVDTSTEQAEARAIRERVRRFVWEALPGAPASEAEIEFAMSTWPAQIDLRYTPKDMDRLEQDGKAKRQSTAGVPDVASLSQLLRTIGAYVEEKRARLVKISRYGESLVIEYDTVTGETSQEEVSAGSLYEFWVQLYLQRSSGGKSRG
Ga0208685_10005924F083021AGGAGGVPQYDIYALCTECGAVHPMRIRIHLDEGPVEKQSMSEIYRGKTRPPQLQALDGHKVLCLKTGRMFVQESHEQVFLVPSYSSQRGL

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