Scaffold Ga0209843_1017568

Overview

Basic Information

• Taxon OID: 3300027511
• Scaffold ID: Ga0209843_1017568
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1412
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003152	Metagenome / Metatranscriptome	504	Y
F009387	Metagenome / Metatranscriptome	318	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209843_10175682	F003152	AGAAGG	MGLTEPARGSGEGGVARFDHWVYGVIPGTGYTSKAFSKGLDAGLYDPYLRGHYTPIRAAAAQTVDADIDLRMIHPIRTGREILVSRVTRGPLDEAGRPTFTNHTLVTTAELLRAGRVSLNAAFGALEEFEKRDPDAQGEMSLLDVPMRPETEGRPNFGSGIHRHLTFPALETLATRIMTDANSRTLMLCRNTTPEARNATLNLTYELLTWGCGLPPLTAISDAPRASALNYFNFVISPRGVRSDSTWAILESALAESVLPRAAERDDVYQVLMAAMRQSPDLPLAR
Ga0209843_10175683	F009387	N/A	FVLSKFDSLRDDVLARLGLHQGFPQDKKSRREYAEALLRVFVPQTLSQIRGGKVAGVNMDKAEYFLSWVRTETQEGMDPVGQPRIVRTGFRPEGGGEPDFSYDEYVHFIEHFRHIAHKIPDEVLEAEKFQAQAAARAA