Scaffold Ga0209843_1007384

Overview

Basic Information

• Taxon OID: 3300027511
• Scaffold ID: Ga0209843_1007384
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2447
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010254	Metagenome / Metatranscriptome	306	Y
F038558	Metagenome / Metatranscriptome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209843_10073842	F038558	N/A	MVLALVLPPRPGEASVATKTLAQMPVTGRLVGGGTFQGRLTVHTLTVDEEGQLAATGILKGTVTTAPGAVTPIPAHSFTAPASLLDLRGTCTTVVLDLAPIVLARLAQPVTLVPIVLGPRGAQQQESLLRTTLCTVARLQE
Ga0209843_10073845	F010254	AGGAG	MADWREALQHQMYPVLTRRLQEGFVLPLYVTCVGRNGSMMCGRYDDIDATGLDFIVEASHIEGEAFPLPIHMLVVDQRGAATHVRCDGEDG