Scaffold Ga0209537_1117161

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209537_1117161

Scaffold Ga0209537_1117161

Overview

Basic Information
Taxon OID	3300027510 Open in IMG/M
Scaffold ID	Ga0209537_1117161 Open in IMG/M
Source Dataset Name	Biogas fermentation microbial communities from Germany - Plant 4 DNA1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	585
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location Name	Bielefeld, North Rhine-Westphalia, Germany
Coordinates	Lat. (^o)	52.0385	Long. (^o)	8.4956	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058636	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209537_11171612	F058636	AGGAGG	VKRVLFVLLLCLIVTLPTQAEIKGYVAVDYDTLNQSWAWTLSVDKHLTDWWFVGASMATYAPEYGFKHFIPAWVPYRLDYEVYTEVHYKNVSLRVTSWCDHWFAQSDQDWLADRWGLTVKLRYDF

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