NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209537_1016492

Scaffold Ga0209537_1016492


Overview

Basic Information
Taxon OID3300027510 Open in IMG/M
Scaffold IDGa0209537_1016492 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 4 DNA1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3754
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065696Metagenome / Metatranscriptome127Y
F101220Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209537_10164923F101220N/AMKTKKLKKFIKKNYSSKEFVLNAYEFFADPPAYFLERLYTQDYDYILDVFLEECRENNVSILDAINYYIINQKI
Ga0209537_10164925F065696GAGMQLLIAYIKNVYQNYFDMGKVIYILLILFLVSCEKEFKQLQRSDVIYNFIALNDDLDTKLYIICSKYEALHLYDDLKGTIIQEIGITNYHKTAKHRMSIVSHTNDIGTCQFQPATYKWLSDKYGINTNFIDPEYSQIEVMVLAFLDNRQNLWVGYKKFNRFKNNIHIYKI

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