Scaffold Ga0209537_1005976

Overview

Basic Information

• Taxon OID: 3300027510
• Scaffold ID: Ga0209537_1005976
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 4 DNA1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9382
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014003	Metagenome / Metatranscriptome	266	Y
F057301	Metagenome / Metatranscriptome	136	N
F084123	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209537_100597611	F014003	AGGAGG	MKVVFNKTKTKTWIKKAHKSSLFGYGHGYIIDGYVMLVDEPHMHPTILEVCGTLTPECKYTAEQFEKMTKLPDTAIEVIDSRLEFVLGPKRRLRIFYDPKTGEELTVDSVYFDLLDNPEAHRFYANVSKSMLWIMYNDETVGVVAPFRLQEQLSHISFKVEAEEDTPEHLDD
Ga0209537_100597612	F057301	GGAGG	MRNSIPGMLTPFDAPIGVPKDNDDEFLVNLSEAPTGGGYLIPDGDYPAVLVDLRKGFSKSGNPQWIWTFAIMSGEHAGKEFPLFTAIIPSALWKVAETVEALGLGKGGTVSKFTKSEALSRRCIISIRKDTYNGQERSSIAKVLPHPDGPGPVTGFNPKKASDDPVPF
Ga0209537_10059764	F084123	GGAGG	LSLANSERLRLVRQFVEMALDLEAIKEDIRHEYRAWFAESATNSRLYKDDEIFSKVARIIDLEAKVLAEVADEHRSLAIQVFRLVQQWLERLDAATRRYIFEGGPSRQQFVDGVAQYIYVICQTEHGDIGAGG