Scaffold Ga0208973_1022276

Overview

Basic Information

• Taxon OID: 3300027506
• Scaffold ID: Ga0208973_1022276
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_66_BLW_10 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1901
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005433	Metagenome / Metatranscriptome	401	Y
F022758	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208973_10222762	F022758	AGGAG	MALPATGSQISMSTVRDYFGLSGSVSLYQLGTYISPNVTTNIKLSATFGGWQNPNSTGAS
Ga0208973_10222763	F005433	AGGAG	MSSRTRFEIETFLLGSHPTVERQALELQNELMQARMQQHPDLAMLEAVATDFVAKNGEFDALISGIEATEEEYWVSRLARLAAIDILTIGKVQPEHMNYMASLSDDAFASCVKSATTLAKSLNDSVQEIEAELGSELTD