NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255182_1006158

Scaffold Ga0255182_1006158


Overview

Basic Information
Taxon OID3300027503 Open in IMG/M
Scaffold IDGa0255182_1006158 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4471
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011581Metagenome / Metatranscriptome289N
F035287Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0255182_10061583F011581AGGMTYHSTRPAKALTNALERLMISISTQELEENHVLLCEYRRACDLLGYDPAKAQWNNVEGVNASGLPNDEDHTIDYYYLLNPEE
Ga0255182_10061589F035287AGAAGVQKIGRVAGLQAAILLLEKPYKAKELAKVLGMHMRITYRILDDLRATGHLYSHRCHYWFDPKKNNNLEHLIPVKDPYA

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