NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208788_1005954

Scaffold Ga0208788_1005954


Overview

Basic Information
Taxon OID3300027499 Open in IMG/M
Scaffold IDGa0208788_1005954 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4989
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033013Metagenome / Metatranscriptome178Y
F038240Metagenome / Metatranscriptome166Y
F079978Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0208788_10059543F038240N/AMATPAGRKMRVQVLLDPEALERMEREVALRYNSDSRVTVSSLANEIIKSHYAILEPTDG
Ga0208788_10059545F033013N/AMAIKLTAKPSSAKTVMLQLDPDLYNRIKVSAKQHNMSAAAAMRQILEQGIEQVEAASV
Ga0208788_10059547F079978N/AMKLYAPELAGTYVWQVADPKSSKTSFAPSKSQSPPPNCCYGHPLGRYDSDGCYWTFCPNAGEEDPNNPKSSRFVKHPLAEQEHLIAVKEKVWGRLDSFGSYKETEF

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