Scaffold Ga0208788_1005954

Overview

Basic Information

• Taxon OID: 3300027499
• Scaffold ID: Ga0208788_1005954
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4989
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033013	Metagenome / Metatranscriptome	178	Y
F038240	Metagenome / Metatranscriptome	166	Y
F079978	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208788_10059543	F038240	N/A	MATPAGRKMRVQVLLDPEALERMEREVALRYNSDSRVTVSSLANEIIKSHYAILEPTDG
Ga0208788_10059545	F033013	N/A	MAIKLTAKPSSAKTVMLQLDPDLYNRIKVSAKQHNMSAAAAMRQILEQGIEQVEAASV
Ga0208788_10059547	F079978	N/A	MKLYAPELAGTYVWQVADPKSSKTSFAPSKSQSPPPNCCYGHPLGRYDSDGCYWTFCPNAGEEDPNNPKSSRFVKHPLAEQEHLIAVKEKVWGRLDSFGSYKETEF