NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255093_1064271

Scaffold Ga0255093_1064271


Overview

Basic Information
Taxon OID3300027492 Open in IMG/M
Scaffold IDGa0255093_1064271 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022187Metagenome / Metatranscriptome215N

Sequences

Protein IDFamilyRBSSequence
Ga0255093_10642711F022187N/AFNMDETKEIIKSDESLKQKIKELIKQVMDEITTSAAAGSGEGSAGVPRVPTWVSKNKKGRPDVATALGYTLAKPVNEAAEPRNDPQQGGEKGQEDPNVYDAKFDLTDFETRVSQSTLQNKGTFQNKIMSKIGNKQVQLRASKGYGQPEKDYVVNVSGVSIDFYYEKYVIVVKGREQGKQKESEYFVKPPYQIKILGNAVVTPSAKKKQQQSPATPVVPVVPTNTATKGV
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