Scaffold Ga0207623_100132

Overview

Basic Information

• Taxon OID: 3300027454
• Scaffold ID: Ga0207623_100132
• Source Dataset Name: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K2-12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3227
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. JS614 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.4
  • Long. (^o): -85.37
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012309	Metagenome / Metatranscriptome	282	Y
F081534	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207623_1001321	F081534	N/A	MRRAFALFGLSATLAVAWISMLPSQALATVTGPCTVSIDGADVTNGHGVPGSAVPLQSGSQVSVDGTAQSRVTDLNYTVHIAGGGVQVGTVTIAQDGLSWSGTVDLESISNATVGLFEVTAEVQTTGQDCSGVAYV
Ga0207623_1001325	F012309	N/A	MAPNAGYVIAGYLITALALGGYTLRLFARARAAKRRAETIAGRRRDG